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A 2D transect following the depth profile of the Elbe river along its central channel

Set of tools to harvest, process and uplift (meta)data from metadata providers within the Helmholtz association to be included in the Helmholtz Knowledge Graph (Helmholtz-KG). The harvested linked data in the form of schema.org jsonld is aggregated and uplifted in data pipelines to be included into a single large knowledge graph (KG). The tool set and harvesters can be used as a python library or over a commandline interface (CLI, hmc-unhide). Provenance of metadata changes is tracked rudimentary by saving graph patches of changes on rdflib Graph data structures on the semantic triple level. Harvesters support extracting data via sitemap, gitlab API, datacite API and OAI-PMH endpoints.

Single-Cell Immunoglobulin (and TCR) Repertoire Toolkit and Database

docs.scireptor.net

OPTIMA Lung Cancer RQ16: which therapy sequence results in the best survival outcomes for small cell lung cancer.

GNU R Package for working with CRNS (cosmic ray neutron sensor data)

Viable North Sea (ViNoS) is an Agent-based Model (ABM) of the German Small-scale Fisheries. As a Social-Ecological Systems (SES) model it focusses on the adaptive behaviour of fishers facing regulatory, economic, and resource changes. Small-scale fisheries are an important part both of the cultural perception of the German North Sea coast and of its fishing industry. These fisheries are typically family-run operations that use smaller boats and traditional fishing methods to catch a variety of bottom-dwelling species, including plaice, sole, and brown shrimp.

Fishers in the North Sea face area competition with other uses of the sea---long practiced ones like shipping, gas exploration and sand extractions, and currently increasing ones like marine protection and offshore wind farming (OWF). German authorities have just released a new maritime spatial plan implementing the need for 30% of protection areas demanded by the United Nations High Seas Treaty and aiming at up to 70 GW of offshore wind power generation by 2045. Fisheries in the North Sea also have to adjust to the northward migration of their established resources following the climate heating of the water. And they have to re-evaluate their economic balance by figuring in the foreseeable rise in oil price and the need for re-investing into their aged fleet.

Patient level prediction package to predict symptomatic progression and death for metastatic hormone sensitive prostate cancer patients

Patient Level Prediction package for PIONEER studyathon 2022

R package to perform diagnostics, characterization, and incidence rate calculation for PIONEER studyathon 3

Collection of Rmarkdown files to pre-process multiple omics data sets and to build MEFISTO multi-omics models within the CEFIC LRI project XomeTox