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Commit 3ddb60a8 authored by Carsten Lemmen's avatar Carsten Lemmen
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Re-added meta files

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cff-version: "1.2.0"
authors:
- family-names: García-Oliva
given-names: Ovidio
orcid: "https://orcid.org/0000-0001-6060-2001"
- family-names: Lemmen
given-names: Carsten
orcid: "https://orcid.org/0000-0003-3483-6036"
message: If you use this software, please cite our article in the
Journal of Open Source Software (submitted).
preferred-citation:
authors:
- family-names: García-Oliva
given-names: Ovidio
orcid: "https://orcid.org/0000-0001-6060-2001"
- family-names: Lemmen
given-names: Carsten
orcid: "https://orcid.org/0000-0003-3483-6036"
date-published: 1970-01-01
issn: 2475-9066
journal: Journal of Open Source Software
publisher:
name: Open Journals
title: "FABM OxyPOM and DiaMO: simple models for dissolved oxygen and
biogeochemistry"
type: article
title: "FABM OxyPOM and DiaMO: simple models for dissolved oxygen and
biogeochemistry"
Makefile 0 → 100644
# SPDX-FileCopyrightText: 2023-2025 Helmholtz-Zentrum hereon GmbH
# SPDX-License-Identifier: CC0-1.0
# SPDX-FileContributor: Carsten Lemmen <carsten.lemmen@hereon.de>
VERSION=0.9.1
DATE=$(shell date +%Y-%m-%d)
IP=$(shell ifconfig en0 | grep inet\ | cut -d " " -f2)
PWD=$(shell pwd)
.PHONY: default clean license docker-run docker-build
default:
@echo Valid Makefile targets are: '"version"'
@echo To build this package, follow the instructions in the Readme.md file.
# This target updates all files that control the versioning
# of the software package
version:
sed -i 's/^version: .*/version: "'$(VERSION)'"/g' CITATION.cff
sed -i 's/^date-released: .*/date-released: "'$(DATE)'"/g' CITATION.cff
sed -i 's/^ "version":.*/ "version": "'$(VERSION)'",'/g codemeta.json
sed -i 's/^ "dateModified":.*/ "dateModified": "'$(DATE)'",'/g codemeta.json
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"license": "https://spdx.org/licenses/Apache-2.0",
"codeRepository": "https://codebase.helmholtz.cloud/dam-elbextreme/oxypom.git",
"contIntegration": "https://codebase.helmholtz.cloud/dam-elbextreme/oxypom/-/pipelines",
"dateCreated": "2025-01-24",
"datePublished": "2025-03-13",
"dateModified": "2025-03-21",
"issueTracker": "https://codebase.helmholtz.cloud/dam-elbextreme/oxypom/-/issues",
"name": "FABM OxyPOM and DiaMO: simple models for dissolved oxygen and biogeochemistry",
"version": "0.9.1",
"description": "OxyPOM (Oxygen and Particulate Organic Matter) and DiaMO (Diagnostic Model for Oxygen) are aquatic biogeochemical models that consider key processes for dissolved oxygen (DO) dynamics, such as re-aeration, mineralization, and primary production. Both models are implemented in the Fortran-based Framework for Aquatic Biogeochemical Models [FABM], which enables their deployment in different physical drivers in realistic and idealized applications. Additional routines for calculating the attenuation of photosynthetically active radiation are included. The processes represented in OxyPOM and DiaMO enable studying DO in fresh, marine, and transitional waters.",
"applicationCategory": "Biogeochemical modeling",
"funding": "public",
"developmentStatus": "active",
"isPartOf": "ElbeXtreme",
"funder": {
"@type": "Organization",
"name": "BMBF"
},
"keywords": [
"FABM",
"Biogeochemistry",
"Oxygen",
"ElbeXtreme",
"OxyPOM",
"DiaMO",
"Fortran",
"Water quality"
],
"programmingLanguage": ["Fortran", "R", "bash"],
"runtimePlatform": ["any"],
"operatingSystem": ["Linux", "Windows", "macOS"],
"author": [
{
"@type": "Person",
"@id": "https://orcid.org/0000-0001-6060-2001",
"givenName": "Ovidio",
"familyName": "Garcia Oliva",
"email": "ovidio.garcia@hereon.de",
"affiliation": {
"@type": "Organization",
"name": "Helmholtz-Zentrum Hereon"
}
},
{
"@type": "Person",
"@id": "https://orcid.org/0000-0003-3483-6036",
"givenName": "Carsten",
"familyName": "Lemmen",
"email": "carsten.lemmen@hereon.de",
"affiliation": {
"@type": "Organization",
"name": "Helmholtz-Zentrum Hereon"
}
}
]
}
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