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Set of tools to harvest, process and uplift (meta)data from metadata providers within the Helmholtz association to be included in the Helmholtz Knowledge Graph (Helmholtz-KG). The harvested linked data in the form of schema.org jsonld is aggregated and uplifted in data pipelines to be included into a single large knowledge graph (KG). The tool set and harvesters can be used as a python library or over a commandline interface (CLI, hmc-unhide). Provenance of metadata changes is tracked rudimentary by saving graph patches of changes on rdflib Graph data structures on the semantic triple level. Harvesters support extracting data via sitemap, gitlab API, datacite API and OAI-PMH endpoints.
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R package for geostatistical analysis of multivariate data, particularly with restrictions, e.g. positive amounts, compositions, distributions, microstructural data, etc. It includes exploratory and modelling tools.
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pvcomb / nomad at pvcomb
Apache License 2.0Updated -
Helmholtz Centre for Environmental Research – UFZ / TB3-CITE / ETOX / iTox / omixR
GNU General Public License v3.0 onlyCustom R-package for toxicogenomic mixture predictions
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peroTF / perotf_nomad_eln
Apache License 2.0Updated -
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sciReptor / Pipeline
GNU Affero General Public License v3.0Single-Cell Immunoglobulin (and TCR) Repertoire Toolkit and Database
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Helmholtz Centre for Environmental Research – UFZ / TB3-CITE / ETOX / iTox / toxprofileR
GNU General Public License v3.0 onlyUpdated -
Helmholtz Centre for Environmental Research – UFZ / TB3-CITE / ETOX / iTox / toxprofileR2
GNU General Public License v3.0 onlyUpdated -
Erenus Yildiz / Using Containers in Science
Creative Commons Attribution 4.0 International(latest) A workshop on how to use containerized solutions for scientific projects using Docker as an example.
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Viable North Sea (ViNoS) is an Agent-based Model (ABM) of the German Small-scale Fisheries. As a Social-Ecological Systems (SES) model it focusses on the adaptive behaviour of fishers facing regulatory, economic, and resource changes. Small-scale fisheries are an important part both of the cultural perception of the German North Sea coast and of its fishing industry. These fisheries are typically family-run operations that use smaller boats and traditional fishing methods to catch a variety of bottom-dwelling species, including plaice, sole, and brown shrimp.
Fishers in the North Sea face area competition with other uses of the sea---long practiced ones like shipping, gas exploration and sand extractions, and currently increasing ones like marine protection and offshore wind farming (OWF). German authorities have just released a new maritime spatial plan implementing the need for 30% of protection areas demanded by the United Nations High Seas Treaty and aiming at up to 70 GW of offshore wind power generation by 2045. Fisheries in the North Sea also have to adjust to the northward migration of their established resources following the climate heating of the water. And they have to re-evaluate their economic balance by figuring in the foreseeable rise in oil price and the need for re-investing into their aged fleet.
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Viable North Sea (ViNoS) is an Agent-based Model (ABM) of the German Small-scale Fisheries. As a Social-Ecological Systems (SES) model it focusses on the adaptive behaviour of fishers facing regulatory, economic, and resource changes. Small-scale fisheries are an important part both of the cultural perception of the German North Sea coast and of its fishing industry. These fisheries are typically family-run operations that use smaller boats and traditional fishing methods to catch a variety of bottom-dwelling species, including plaice, sole, and brown shrimp.
Fishers in the North Sea face area competition with other uses of the sea---long practiced ones like shipping, gas exploration and sand extractions, and currently increasing ones like marine protection and offshore wind farming (OWF). German authorities have just released a new maritime spatial plan implementing the need for 30% of protection areas demanded by the United Nations High Seas Treaty and aiming at up to 70 GW of offshore wind power generation by 2045. Fisheries in the North Sea also have to adjust to the northward migration of their established resources following the climate heating of the water. And they have to re-evaluate their economic balance by figuring in the foreseeable rise in oil price and the need for re-investing into their aged fleet.
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