Annotation(dcterms:description "The Helmholtz Digitisation Ontology (HDO) provides precise and comprehensive semantics of the concepts and practices used to manage digital assets such as research data. It is developed in alignment with the practices and conventions of the OBO Foundry and released as a machine readable artifact with high semantic expressiveness. HDO is semantically top-level aligned with the basic formal ontology (BFO: https://basic-formal-ontology.org/). HDO is developed by the Helmholtz Metadata Collaboration (HMC: (https://helmholtz-metadaten.de/en)."@en)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000116> "Main contributors to the HDO development are credited as dce:contributor in the ontology metadata. In addition, micro-contributions (to the definition of a specific term) by people that are not main contributors are credited as dce:contributor at the term-level."@en)
Annotation(dcterms:description "The Helmholtz Digitisation Ontology (HDO) provides precise and comprehensive semantics of the concepts and practices used to manage digital assets such as research data. It is developed in alignment with the practices and conventions of the OBO Foundry and released as a machine readable artifact with high semantic expressiveness. HDO is semantically top-level aligned with the basic formal ontology (BFO: https://basic-formal-ontology.org/). HDO is developed by the Helmholtz Metadata Collaboration (HMC: (https://helmholtz-metadaten.de/en)."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000008 "A process during which data are assigned to a category in a data type classification system."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000008 "A planned process during which data are assigned to a category in a data type classification system."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000008 "Ein geplanter Prozess, bei dem Daten einer Kategorie in einem Datentypklassifikationssystem zugeordnet werden."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000032 "A directed acyclic graph which is (1) used to represent knowledge about entities (represented as nodes) by relating them to one another with formalised logical relations (represented as edges) (2) logically coherent, such that it can be reasoned over and used for inference by machine agents and (3) constructed such that nodes further along in a path inherit all the semantic properties of their antecedents. "@en)
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@@ -907,7 +906,7 @@ AnnotationAssertion(skos:note :HDO_00000033 "Eine strukturierte Sammlung von Beg
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000034 "A schema which describes the structure of a persistent identifier record."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000042 "A datum which some agent has declared as the main focus of a process."@en)
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@@ -1114,7 +1113,7 @@ AnnotationAssertion(:HDO_00001024 :HDO_00000044 "abstract data types"@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000045 "A unique identifier which some agent has committed to maintain - in the long term - as a valid reference to an entity."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00000106 "A digital system which includes computer software granting users the ability to interact with one or more databases using functions that allow access, entry, storage, retrieval, and (re)organization of data en masse."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001005 "Information which defines the requirements that must be met in order for an entity to be considered a member of a set or a type."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001053 "System software which manages the operation of a specified range of hardware. "@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001059 "A process during which a signifier of a quality is expressed as a multitude or magnitude."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001059 "Ein Prozess, bei dem ein Zeichen einer Eigenschaft als eine Menge, Größe oder ein Ausmaß ausgedrückt wird."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001059 "A planned process during which a signifier of a quality is expressed as a multitude or magnitude."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001059 "Ein geplanter Prozess, bei dem ein Zeichen einer Eigenschaft als eine Menge, Größe oder ein Ausmaß ausgedrückt wird."@de)
@@ -2341,9 +2342,9 @@ AnnotationAssertion(skos:note :HDO_00001059 "A process during which a signal or
AnnotationAssertion(skos:note :HDO_00001059 "Ein Prozess, bei dem ein Signal oder ein Phänomen als eine Menge, Größe oder ein Ausmaß ausgedrückt wird."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001061 "A process during which an agent perceives some quality and creates a signifier thereof."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001061 "Ein Prozess, bei dem ein Akteur eine Eigenschaft wahrnimmt und davon ein Zeichen erschafft."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001061 "A planned process during which an agent perceives some quality and creates a signifier thereof."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001061 "Ein geplanter Prozess, bei dem ein Akteur eine Eigenschaft wahrnimmt und davon ein Zeichen erschafft."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> :HDO_00001061 "this class could have subclass axioms added: has participant some agent. For this class agent needs to be defined or imported. This could also be done at the instance level where the nature of the agent can be identified more clearly (i.e. machine agent, human or else)."@en)
AnnotationAssertion(rdfs:comment :HDO_00001061 "This is the process which creates a generically dependent contiinuant that represents a specifically dependent continuant."@en)
AnnotationAssertion(rdfs:comment :HDO_00001061 "We need to think about how to deal with the \"perception process\". Is it the same as the qualification process, or do we need a new class?"@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001066 "A function which inheres in a bearer and is realised when that bearer allows to estimate the existence, identity, properties, or behaviours of an entity."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001066 "Eine Funktion, die einem Träger innewohnt und realisiert wird, wenn dieser Träger es ermöglicht, die Existenz, die Identität, die Eigenschaften oder das Verhalten einer Entität zu schätzen."@de)
AnnotationAssertion(rdfs:comment :HDO_00001066 "Under colloquial use, entities that bear the model function are often referred to as \"the model\". Also, colloquially the term model is also used as a verb in order to express the process of (computational) modelling, e.g. \"i am going to model phenomenon xyz\").
The bearer might be material entities such as a scale model of a car, or a generically dependent continuant such as a mathematical formula that models a process. The estimation of properties may be in past (e.g. estimation of the temperature during the big bang), present (estimation of the proportions of a car through a scale model, or the prediction of a parameter based on others) or the future (estimation of a neurons membrane potential in a network).
Models are always an abstraction of the entity that they represent. A differential equation can be used to simulate the membrane potential of a neuron over time while the spatial extend and complexity of the neuron itself is reduced to a point process. Further models highly depend on input parameters partly determining the behavior of the model and as such are often loaded with assumptions. In that sense the model output is an estimation that can be interpreted by an agent in order to infer or indicate information about another entity (i.e. existence or else)."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001067 "A model which is formalised in order to be executed or resolved."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001067 "Ein Modell, das formalisiert wird, um ausgeführt oder gelöst zu werden."@de)
AnnotationAssertion(rdfs:comment :HDO_00001067 "The bearer of the computational model might be a mathematical formula such as a differential equation (e.g. predicting dynamics of a parameter over some dimension such as time). A model may be used in a process such as a computational modelling to generate simulation data."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001068 "A planned process during which a computational model is executed or resolved to estimate the existence, identity, properties or behaviour of an entity."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001068 "Ein geplanter Prozess, bei dem ein Computermodell ausgeführt oder aufgelöst wird, um die Existenz, die Identität, die Eigenschaften oder das Verhalten einer Entität abzuschätzen."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001069 "A quantitative datum which is the output of computational modelling."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001069 "Ein quantitatives Datum, das das Ergebnis einer computergestützten Simulation ist."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001070 "A quantification process during which the quantified signifier of a quality stems from an independent continuant."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00001070 "Ein Quantifizierungsprozess, bei dem der zu quantifizierte Signifier einer Qualität von einem Independent Continuant abhängt."@de)
AnnotationAssertion(rdfs:comment :HDO_00001070 "This class is created to differentiate quantification processes in real-world (= physical) entities that can be measured (i.e. with a tape measure, versus these quantification processes that happen during calculations or computational modelling. Independent continuants encompass material entities (e.g. physical objects) as well as immaterial entities (e.g. the border of a country)."@en)
AnnotationAssertion(rdfs:comment :HDO_00001071 "This class is created to be able to discriminate data originating from computational models (HDO_00001069) from those that comes from measurements and experimentation (this class)."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00002001 "A vocabulary which only includes terms that have been deliberately selected by its authors and/or maintainers."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00002016 "An entity which is used as a reference, model, or example to determine membership in a set or a type."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00002020 "Reusability which inheres in data whose metadata (1) are rich, comply with community standards, are associated with detailed provenance, and include links to a clear and accessible data usage license, and (2) are used - in whole or in part - to facilitate multiple, valid, and authorised uses of that data."@en)
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@@ -2690,7 +2767,7 @@ AnnotationAssertion(skos:note :HDO_00002020 "Das Potential von Daten zur Wiederv
AnnotationAssertion(skos:note :HDO_00002020 "The potential of data to be reused, based on how richly they are annotated with accurate, standardised metadata including licensing and provenance information."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00002021 "A disposition which inheres in data and which is realised when they are validly used more than once."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00002031 "An infrastructure which is composed of hardware, software, or other digital assets."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007002 "An analysis through which knowledge about an entity is inferred from data."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007002 "Eine Analyse durch die Wissen über eine Entität aus Daten abgeleitet wird."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007002 "A planned process through which information about an entity is inferred, extracted from data."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007002 "Ein geplanter Prozess, durch den Informationen über eine Entität aus Daten abgeleitet werden."@de)
AnnotationAssertion(rdfs:comment :HDO_00007002 "Schreiben Sie hier Ihren Kommentar, gleiche Formatierungsregeln wie bei den Definitionen. TODO: Add term \"analysis\" e.g. as a subclass of process."@de)
AnnotationAssertion(rdfs:comment :HDO_00007002 "Write your comment here, same formatting rules as definitions."@en)
AnnotationAssertion(rdfs:comment :HDO_00007002 "The output of the analysis process may either be a transformed version of the input data or created de novo during the analysis process in both cases it need to serve an information role. We also consider signifiers to be a possible output of data analysis. This is described by the following example.
During the MRI the magnetic signals are measured. These are analyzed from an image that can be considered data. Also it can be considered a signifier as only further analysis by a doctor (or a machine agent) a tissue damage can be diagnosed. In any case the output has to serve an information role for the process to be considered data analysis. In this example the input data is transformed during the analysis process in order to become informative."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007011 "Interoperability which is realised when the involved agents use one or more formal languages for knowledge representation to coordinate their operations."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007022 "A role which inheres in a signifier, and is realised when that signifier reduces uncertainty about the existence, identity, or properties of the entity it represents."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007022 "Eine Rolle die einem Zeichen innewohnt, und die realisiert wird, wenn dieses Zeichen die Ungewissheit bezüglich der Existenz, Identität oder der Eigenschaften einer Entität die es repräsentiert, verringert."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007022 "A role which inheres in a generally dependent continuant, and is realised when that generally dependent continuant reduces uncertainty about the existence, identity, or properties of the entity it represents."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_00007022 "Eine Rolle die einem generally dependent continuant innewohnt, und die realisiert wird, wenn dieses generally dependent continuant die Ungewissheit bezüglich der Existenz, Identität oder der Eigenschaften einer Entität die es repräsentiert, verringert."@de)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_10000047 "A role which inheres in an entity and is realized when the magnitude of at least one of its qualities is used as a reference to express the magnitude of the same quality or qualities in other entities."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> :HDO_10000047 "Eine Rolle, die einer Entität innewohnt und realisiert wird, wenn die Größe mindestens einer ihrer Eigenschaften als Referenz verwendet wird, um die Größe der gleichen Eigenschaft oder Eigenschaften anderer Entitäten auszudrücken."@de)
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@@ -3215,6 +3294,41 @@ AnnotationAssertion(rdfs:comment <https://json-schema.org/> "The representation
