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_data/navigation.yml
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link: "/members.html"
description: Who are the people behind LEAPS WG3?
- name: Posts
link: "/posts.html"
description: News or blog posts from our members.
- name: Outcomes
link: "/outcomes.html"
description: The PaN toolbox for open science we keep developing and further adopting.
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_posts/2023-07-17-LEAPS-data-strategy.md deleted 100644 → 0
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---
layout: post
title: LEAPS data strategy white paper published
category: publication
pic: https://media.springernature.com/full/springer-static/image/art%3A10.1140%2Fepjp%2Fs13360-023-04189-6/MediaObjects/13360_2023_4189_Fig2_HTML.png?as=webp
link: https://doi.org/10.1140/epjp/s13360-023-04189-6
excerpt: 'Our LEAPS data strategy paper has been accepted! It presents the strategy of our facilities to address the data challenges of the current and future photon sources in Europe.'
---
## Abstract
The continuous evolution of photon sources and their instrumentation enables more and new scientific endeavors at ever increasing pace. This technological evolution is accompanied by an exponential growth of data volumes of increasing complexity, which must be addressed by maximizing efficiency of scientific experiments and automation of workflows covering the entire data lifecycle, aiming to reduce data volumes while producing FAIR and open data of highest reliability. This papers briefly outlines the strategy of the league of European accelerator-based photon sources user facilities to achieve these goals collaboratively in an efficient and sustainable way which will ultimately lead to an increase in the number of publications.
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_posts/2023-07-27-ML-workshop.md deleted 100644 → 0
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---
layout: post
title: Leveraging open data from PaN facilities for machine learning
pic: 'assets/images/Workshop-open-data-for-ML-unlocked.jpg'
category: workshop
link: https://indico.synchrotron-soleil.fr/event/67/
excerpt: 'Registration is open for our workshop to discuss the opportunity to exploit PaN open data for machine learning applications. It will be held at SOLEIL synchrotron in October 2023, as a satellite event of the LEAPS general assembly.'
---
## Exploiting open data for machine learning training: can the Photon and Neutron community do it?
During the last decade, most European Photon and Neutron (PaN) facilities have adopted [open data policies](https://www.panosc.eu/data/panosc-data-policy-framework/), making data available for the benefit of the entire scientific community. At the same time, machine learning (ML) is seen as an essential tool to address the exponential growth of data volumes from PaN facilities.
Exploitation of experimental training datasets is a key component of machine learning. The combination of ML algorithms and open data can therefore be seen as an ideal marriage that would ultimately help the entire community to tackle ‘big data’ challenges with more automation.
However, finding the right data to train machine learning algorithms is a challenge and one of the motivations for making data FAIR is exactly that: to provide scientists working on AI applications with quality training datasets.
But what does 'quality' mean to PaN science communities? What metadata fields are needed to find the data, to understand if it is suitable for our research, and ultimately to be able to ingest it in our training models? How can we provide sufficiently rich metadata? What would be the enablers for more machine learning applications? How can we improve the collaboration between data producers (domain scientists) and data consumers (ML experts)?
## Objectives
With this workshop, we aim to discuss these questions, among staff and users of the LEAPS and LENS facilities, across disciplines and across Europe.
We will present projects and teams that have successfully used open datasets from PaN facilities to train their specific ML application (data consumers), as well as domain scientists (data producers) who have published curated data specifically for ML applications.
We will also look at cases where it hasn't worked so well, to identify what needs to be better curated on the FAIR data management side or understand the challenges in finding ML experts to effectively utilise the available data. A significant part of the workshop will be dedicated to discussion.
## Call for abstracts
During the workshop, we have slots available for 20 minute presentations. We are particularly interested in contributions that can address the following points:
* Have you used open data for machine learning? What has been your experience?
* Do you feel your research could benefit from more and better curated open data? Tell us why and how.
* Have you already made open datasets available to your community for machine learning training purposes? What has been your experience?
* Have you managed to enrich the metadata of open datasets for better training? Share with us how you accomplished it.
Whatever your discipline, as long as the data originally came from experiment(s) at a photon or neutron source, please submit an abstract in our [indico page]({{ page.link }}).
## Venue
The workshop will be held at the SOLEIL synchrotron, Saint Aubin (France) as a satellite event of the LEAPS General Assembly. Please note there is a 50€ registration fee for on-site participants.
Remote participation will be possible too and is free of charge.
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_posts/2023-07-31-RDA-plenary-session.md deleted 100644 → 0
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---
layout: post
title: PaN science interest group session at the international data week 2023 in Salzburg
category: workshop
pic: https://www.rd-alliance.org/sites/default/files/idw2023%20image.jpg
link: https://www.rd-alliance.org/plenaries/international-data-week-2023-salzburg/tools-and-methods-working-towards-fair-facility
excerpt: 'Our session on "tools and methods working towards the FAIR facility" has been accepted. We look forward to discussing the FAIR toolkit developed in the frame of ExPaNDS and PaNOSC, sharing it with the wider RDA community and comparing with similar efforts in facilities around the world. We would also like to discuss how we will further its adoption and continue to develop it within future programmes.'
---
## Meeting agenda
### Approaches to Implementing FAIR Data in Facilities Internationally – 35 mins
1. A FAIR data toolkit for European PaN RIs - Brian Matthews (STFC) (contribution from Andy Götz - ESRF) - 10 mins
2. FAIR principles adoption in US laboratories - Line Pouchard (BHNL), Jon Taylor (SNS) - 15 mins
3. RDM strategies for photon and neutron facilities in Germany - Markus Kubin (HZB) - 10 mins
### Tools to support FAIR Data in Facilities - 25 mins
1. Data Management Plans within facilities processes - Heike Görzig (HZB)
2. FAIR vocabularies - Alejandra Gonzalez-Beltran (STFC)
3. PIDs for Scientific Data: Applications in Synchrotron and FEL Facilities - Andrei Vukolov (Elettra)
### Future activities of PaN community on FAIR practices - 15 mins
1. Building on the ExPaNDS, PaNOSC and EOSC-Future projects in OSCARS - Sophie Servan (DESY)
2. The work of LEAPS Working Group 3 and developing an international MoU on RDM - Majid Ounsy (Soleil)
### Discussion on Future IG activities - 15 mins
## Venue
This session is part of the International Data Week 2023 that will happen in Salzburg from 23 to 26 October 2023. International Data Week brings together a global community of data scientists and data stewards; researchers from all domains; data, interoperability and informatics experts from all fields (including geoinformatics, bioinformatics, cheminformatics etc); industry leaders, entrepreneurs and policymakers.
Early-bird registration [is open here](https://internationaldataweek.org/idw2023/registration/) until September 15, 2023.
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_posts/2023-08-08-two-NFFA-Europe-workshops.md deleted 100644 → 0
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---
layout: post
title: Two joint NFFA-Europe workshops on open data, microscopy and analytical large-scale facilities
category: workshop
pic: https://www.nffa.eu/media/382578/new_pagina-web-nffa-workshops-events.jpg?anchor=center&mode=resize&width=1000
link: https://www.nffa.eu/news/events/two-joint-nffa-europe-workshops-on-microscopy-open-data-and-analytical-large-scale-facilities/
excerpt: 'NFFA-Europe is glad to announce two upcoming workshops which will explore some highly relevant issues in the world of nanoscience and nanotechnology. The two half-day events will take place at the MLZ (Heinz Maier-Leibnitz Zentrum) premises in Garching, Munich (Germany) on September 26th.'
---
The first workshop “**FAIR and Open Data in NFFA-Europe Pilot and
Beyond**”, scheduled in the morning (9:00-13:00), will be focused on
Open Data practices and FAIR principles and their relevance for
research infrastructure activities and, more in general, for the
advancement of science.
The first four speakers will present the approaches adopted by the
**NFFA-Europe Pilot project**, sharing insights and successful
stories. Special attention will be devoted to the solutions and tools
devised and implemented during the project’s research journey. In the
second part of the workshop, other European research projects will
take the stage: **FAIRMAT**, **NFDI-MatWerk**, **MARVEL** and **GO
FAIR**. Speakers will discuss practical use cases and provide further
valuable insights.
The second workshop “**Bridging Microscopy and Analytical Large-Scale
Facilities**”, scheduled in the afternoon (14:00-17:50), will switch
the focus to another aspect of paramount importance in nanoscience
research: how to seamlessly combine cutting-edge experiments at
analytical large-scale facilities with complementary lab-based
microscopy.
The workshop will explore the opportunity to collect data and
information at the nanoscale **using different imaging modalities**,
an issue which is highly attractive for interdisciplinary nanoscience
communities. The eight speakers will present relevant results and
discuss the way forward to **establish a user platform** which will
allow to collect correlative structural and chemical information of
nanoscale objects.
The workshops can be attended either in person or remotely.
## Tentative agenda: FAIR and open data in NFFA-Europe pilot and beyond
### FIRST SESSION: FAIR data @ NFFA-Europe Pilot
|---|---|
| 09:00 - 09:10 | Welcome and Introduction |
| 09:10 - 09:30 | General approach to FAIRification in NFFA-Europe Pilot |
| 09:30 - 09:50 | Open data and open publications in H2020 |
| 09:50 - 10:10 | Successful stories in NFFA-Europe Pilot and beyond |
| 10:10 - 10:30 | Towards FAIR data in practice: the Scanning Tunneling Microscopy use case |
| 10:30 - 11:00 | Coffee break |
### SECOND SESSION: Insights from other communities
|---|---|
| 11:00 - 11:20 | FAIRMAT Multi-Dimensional Photoemission Spectroscopy: a concept for FAIR photoemission data |
| 11:20 - 11:40 | NFDI-MatWerk Digital Materials Environment – An Architecture and Tools based on FAIR Digital Objects for the NFDI-MatWerk |
| 11:40 - 12:00 | NCCR MARVEL and MaX CoE More than open data: towards a FAIR data and simulation infrastructure with AiiDA and Materials Cloud |
| 12:00 - 12:30 | GO FAIR Approaching FAIR data management in nanotechnologies and semiconductor cleanrooms, the ENL experience |
| 12:30 - 12:50 | Open discussion |
| 12:50 - 13:00 | Closing remarks |
## Tentative agenda: Bridging microscopy and analytical large-scale facilities
### FIRST SESSION
|---|---|
| 14:00 - 14:30 | Colloidal doped-quantum dots for sensing and photocatalysis: from chemical design to advanced physicochemical features |
| 14:30 - 14:50 | Elucidating the Structural Pathways for Lipid Membrane Solubilization using Electrons, Neutrons and X-rays |
| 14:50 - 15:10 | Combination of small-angle neutron scattering and electron microscopy opens new vistas in ultrastructural studies of photosynthetic membranes |
| 15:10 - 15:40 | Superchaotropic nano-ion binding as a gelation motif in cellulose ether solutions |
| 15:40 - 16:10 | Coffee break |
### SECOND SESSION
|---|---|
| 16:10 - 16:40 | Revealing chemical heterogeneity in the surface layer of a tooling alloy by collaborative imaging using synchrotron X-ray techniques |
| 16:40 - 17:00 | Correlative X-ray imaging at ESRF beamline ID21: challenges, developments and recent applications |
| 17:00 - 17:20 | Correlative imaging of Materials: Bridging 2D and 3D |
| 17:20 - 17:40 | TBD |
| 17:40 - 17:50 | Closing remarks |
When: 2023-09-26
Location: Garching/Munich (Germany)
Organizer: NFFA-Europe
contributing.md
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......@@ -22,23 +22,6 @@ _If that doesn't work, or if you don't find your home institute, please refer to
* Check you like the result navigating to your local server, usually at http://127.0.0.1:4000/members.html.
* Push your changes directly to `master` if you are a member, creating a MR otherwise.
## Adding a [post](https://leaps-wg3.desy.de/posts.html)
* In [`_posts`](_posts), create a new file using the convention: `YYYY-MM-DD_title.md`
* Add front matter using the following schema:
```
---
layout: post
title: Your post's title (mandatory)
category: publication / workshop / anything else (optional)
pic: link to a picture (optional)
link: link to more resources (optional)
excerpt: 'A teaser or excerpt of the content of the post' (mandatory)
---
```
* Add your content in the body of the .md file.
* Check you like the result navigating to your local server, usually at http://127.0.0.1:4000/posts.html.
* Push your changes directly to `master` if you are a member, creating a MR otherwise.
## Edit your facility-related data
If you'd like to update the data concerning your facility, be it:
- its adoption status of outcomes in the [adoption table](https://leaps-wg3.desy.de/outcomes.html#adoption-table)
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