add open data resources

_data/navigation.yml

@@ -3,6 +3,10 @@
   link: "/members.html"
   description: Who are the people behind LEAPS WG3?
 
+- name: Posts
+  link: "/posts.html"
+  description: News or blog posts from our members.
+
 - name: Outcomes
   link: "/outcomes.html"
   description: The PaN toolbox for open science we keep developing and further adopting.
@@ -11,10 +15,10 @@
   link: "/current-work.html"
   description: The current focus of the working group, in particular the special interest groups and projects.
 
-- name: Posts
-  link: "/posts.html"
-  description: News or blog posts from our members.
-  
+- name: Open data
+  link: "/open-data-resources.html"
+  description: Catalogue of public and curated data repositories in the PaN community.
+
 - name: Funding
   link: "/funding.html"
   description: Funding opportunities for the PaN community at the moment or in a foreseeable future.

_data/odrs.yml

+# called items with site.data.odrs
+- short-name: SASDB
+  name: Small Angle Scattering Biological Data Bank
+  description: SASBDB is a curated repository of freely accessible and fully searchable SAS experimental data, which are deposited together with the relevant experimental conditions, sample details, instrument characteristic and derived models. The quality of deposited experimental data and the accuracy of models obtained from SAS and complementary techniques is assessed by the site developers.
+  link: https://www.sasbdb.org/
+  pic: https://www.sasbdb.org/media/sasbdb-logo.png
+
+- short-name: PED
+  name: Protein Ensemble Database
+  link: https://proteinensemble.org/
+  pic: https://proteinensemble.org/assets/logos/PED_logo_blue.svg
+  description: PED is a platform for the intrinsically disordered proteins (IDP) community where ensembles and their corresponding primary data can be stored and used as benchmarking datasets to facilitate the development of new ensemble calculation methods. 
+
+- short-name: AlphaFold
+  name: Protein Structure Database
+  link: https://www.alphafold.ebi.ac.uk/
+  description: "AlphaFold, the state-of-the-art AI system developed by DeepMind, is able to computationally predict protein structures with unprecedented accuracy and speed. Working in partnership with EMBL’s European Bioinformatics Institute (EMBL-EBI), we’ve released over 200 million protein structure predictions by AlphaFold that are freely and openly available to the global scientific community. Included are nearly all catalogued proteins known to science – with the potential to increase humanity’s understanding of biology by orders of magnitude."
+
+- short-name: wwPDB
+  name: Protein Data Bank
+  link: https://www.wwpdb.org/
+  pic: https://cdn.rcsb.org/wwpdb/img/core/wwpdb-logo.png
+  description: Since 1971, the Protein Data Bank archive (PDB) has served as the single repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies. 
+
+- short-name: EMDB
+  name: Electron Microscopy Data Bank 
+  link: https://www.ebi.ac.uk/emdb/
+  pic: https://www.ebi.ac.uk/em_static/images/emdb/EMBD_logo_2017_light_background.png
+  description: EMDB (the Electron Microscopy Data Bank) is a public repository for electron cryo-microscopy maps and tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, sub-tomogram averaging, fibre diffraction and electron crystallography.
+
+- short-name: BMRB
+  name: Biological Magnetic Resonance Bank
+  link: https://bmrb.io/
+  pic: https://bmrb.io/images/BMRB_logo_text.svg
+  description: BMRB makes bio-NMR data FAIR. It collects, annotates, archives, and disseminates spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites.
+
+- short-name: Human Organ Atlas
+  name: Human Organ Atlas
+  link: https://human-organ-atlas.esrf.eu/
+  description: The Human Organ Atlas is making Hierarchical Phase-Contrast Tomography (HiP-CT) 3D scans of entire organs, with ca. 20 micron voxels, open access.
\ No newline at end of file

_sass/main.scss

@@ -104,7 +104,7 @@ img.hundred {
   justify-content: center;
 }
 
-.page-box, .member-box, .post-box {
+.page-box, .member-box, .post-box, .odr-box {
   border: $border-std solid $color-strong;
   border-radius: $padding-big;
   box-sizing: border-box;
@@ -112,7 +112,7 @@ img.hundred {
   margin: $padding-std;
 }
 
-.page-box, .post-box {
+.page-box, .post-box, .odr-box {
   text-decoration: none;
   transition: background-color 0.3s ease;
   :first-child {
@@ -144,7 +144,21 @@ img.hundred {
   }
 }
 
-.page-box:hover, .member-box, .post-box:hover {
+.odr-box { 
+  img {
+    float: right;
+    padding-left: $padding-big;
+    padding-bottom: $padding-std;
+    width: 17%;
+    text-align: right;
+  }
+  h2 {
+    margin-top: 0;
+    margin-bottom: $padding-std;
+  }
+}
+
+.page-box:hover, .member-box, .post-box:hover, .odr-box:hover {
   background-color: $color-fade;
   text-decoration: none;
 }

open-data-resources.html

+---
+title: Open data resources
+---
+<h1>{{ page.title }}</h1>
+
+<div class="container">
+  {% assign sorted_odrs = site.data.odrs | sort: 'short-name' %}
+  {% for odr in sorted_odrs %}
+    <a href="{{ odr.link }}" class="odr-box">
+      <img src="{{ odr.pic }}" alt="{{ odr.short-name }}">
+      <h2>{{ odr.name }}</h2>
+      <p>{{ odr.description }}</p>
+    </a>
+  {% endfor %}
+</div>
\ No newline at end of file