Add Spectronaut support
The software currently searches in a given path to a MaxQuant output TXT path for the MaxQuant results files.
The usability shell be extended to Spectronaut output files.
The Spectronau file of interest ends with Reports.
+ file extension.
The MaxQuant LFQ or iBAQ values are here equivalent to the Quantity
columns.
Spectronaut imputes all missing values this shell be avoided, since some proteins are likely to be real absent proteins.
It needs to be tested if the .PG.IsIdentified
columns containing FALSE
are equivalent to the NrOfPrecursorsIdentified
contaning the value 0
.
If that is the case the missing precursors shell be mapped to the intensity matrix in the way that all quantity values that are considered missing are replaced by the value 0.