odrs.yml

# called items with site.data.odrs
- short-name: SASDB
  name: Small Angle Scattering Biological Data Bank
  description: SASBDB is a curated repository of freely accessible and fully searchable SAS experimental data, which are deposited together with the relevant experimental conditions, sample details, instrument characteristic and derived models. The quality of deposited experimental data and the accuracy of models obtained from SAS and complementary techniques is assessed by the site developers.
  link: https://www.sasbdb.org/
  pic: https://www.sasbdb.org/media/sasbdb-logo.png
  api: https://www.sasbdb.org/rest-api/docs/
  technique: 
    - IRI: http://purl.org/pan-science/PaNET/PaNET01124
      name: small angle scattering

- short-name: PED
  name: Protein Ensemble Database
  link: https://proteinensemble.org/
  pic: https://proteinensemble.org/assets/logos/PED_logo_blue.svg
  description: PED is a platform for the intrinsically disordered proteins (IDP) community where ensembles and their corresponding primary data can be stored and used as benchmarking datasets to facilitate the development of new ensemble calculation methods. 
  api: https://proteinensemble.org/api

- short-name: AlphaFold
  name: Protein Structure Database
  link: https://www.alphafold.ebi.ac.uk/
  description: "AlphaFold, the state-of-the-art AI system developed by DeepMind, is able to computationally predict protein structures with unprecedented accuracy and speed. Working in partnership with EMBL’s European Bioinformatics Institute (EMBL-EBI), we’ve released over 200 million protein structure predictions by AlphaFold that are freely and openly available to the global scientific community. Included are nearly all catalogued proteins known to science – with the potential to increase humanity’s understanding of biology by orders of magnitude."
  api: https://www.alphafold.ebi.ac.uk/api-docs
  data-licence: CC-BY-4.0

- short-name: wwPDB
  name: Protein Data Bank
  link: https://www.wwpdb.org/
  pic: https://cdn.rcsb.org/wwpdb/img/core/wwpdb-logo.png
  description: Since 1971, the Protein Data Bank archive (PDB) has served as the single repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies. 
  data-licence: CC0-1.0

- short-name: EMDB
  name: Electron Microscopy Data Bank 
  link: https://www.ebi.ac.uk/emdb/
  pic: https://www.ebi.ac.uk/em_static/images/emdb/EMBD_logo_2017_light_background.png
  description: EMDB (the Electron Microscopy Data Bank) is a public repository for electron cryo-microscopy maps and tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, sub-tomogram averaging, fibre diffraction and electron crystallography.
  api: https://www.ebi.ac.uk/emdb/api/
  technique: 
    - IRI: http://purl.org/pan-science/PaNET/PaNET01145
      name: electron microscopy

- short-name: BMRB
  name: Biological Magnetic Resonance Bank
  link: https://bmrb.io/
  pic: https://bmrb.io/images/BMRB_logo_text.svg
  description: BMRB makes bio-NMR data FAIR. It collects, annotates, archives, and disseminates spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites.
  api: https://github.com/bmrb-io/BMRB-API

- short-name: Human Organ Atlas
  name: Human Organ Atlas
  link: https://human-organ-atlas.esrf.eu/
  description: The Human Organ Atlas is making Hierarchical Phase-Contrast Tomography (HiP-CT) 3D scans of entire organs, with ca. 20 micron voxels, open access.
  data-licence: CC-BY-4.0