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# called items with site.data.odrs
- short-name: SASDB
name: Small Angle Scattering Biological Data Bank
description: "SASBDB is a curated repository of freely accessible
and fully searchable SAS experimental data, which are deposited
together with the relevant experimental conditions, sample details,
instrument characteristic and derived models. The quality of
deposited experimental data and the accuracy of models obtained
from SAS and complementary techniques is assessed by the site
developers."
link: https://www.sasbdb.org/
pic: https://www.sasbdb.org/media/sasbdb-logo.png
api: https://www.sasbdb.org/rest-api/docs/
technique:
- IRI: http://purl.org/pan-science/PaNET/PaNET01124
name: small angle scattering
- short-name: PED
name: Protein Ensemble Database
link: https://proteinensemble.org/
pic: https://proteinensemble.org/assets/logos/PED_logo_blue.svg
description: "PED is a platform for the intrinsically disordered
proteins (IDP) community where ensembles and their corresponding
primary data can be stored and used as benchmarking datasets to
facilitate the development of new ensemble calculation methods."
api: https://proteinensemble.org/api
- short-name: AlphaFold
name: Protein Structure Database
link: https://www.alphafold.ebi.ac.uk/
description: "AlphaFold, the state-of-the-art AI system developed
by DeepMind, is able to computationally predict protein structures
with unprecedented accuracy and speed. Working in partnership with
EMBL’s European Bioinformatics Institute (EMBL-EBI), we’ve released
over 200 million protein structure predictions by AlphaFold that
are freely and openly available to the global scientific community.
Included are nearly all catalogued proteins known to science – with
the potential to increase humanity’s understanding of biology by
orders of magnitude."
api: https://www.alphafold.ebi.ac.uk/api-docs
- short-name: wwPDB
name: Protein Data Bank
link: https://www.wwpdb.org/
pic: https://cdn.rcsb.org/wwpdb/img/core/wwpdb-logo.png
description: "Since 1971, the Protein Data Bank archive (PDB) has
served as the single repository of information about the 3D
structures of proteins, nucleic acids, and complex assemblies."
- short-name: EMDB
name: Electron Microscopy Data Bank
link: https://www.ebi.ac.uk/emdb/
pic: https://www.ebi.ac.uk/em_static/images/emdb/EMBD_logo_2017_light_background.png
description: "EMDB (the Electron Microscopy Data Bank) is a public
repository for electron cryo-microscopy maps and tomograms of
macromolecular complexes and subcellular structures. It covers a
variety of techniques, including single-particle analysis, electron
tomography, sub-tomogram averaging, fibre diffraction and electron
crystallography."
api: https://www.ebi.ac.uk/emdb/api/
technique:
- IRI: http://purl.org/pan-science/PaNET/PaNET01145
name: electron microscopy
- short-name: BMRB
name: Biological Magnetic Resonance Bank
link: https://bmrb.io/
pic: https://bmrb.io/images/BMRB_logo_text.svg
description: "BMRB makes bio-NMR data FAIR. It collects, annotates,
archives, and disseminates spectral and quantitative data derived
from NMR spectroscopic investigations of biological macromolecules
and metabolites."
api: https://github.com/bmrb-io/BMRB-API
- short-name: Human Organ Atlas
name: Human Organ Atlas
link: https://human-organ-atlas.esrf.eu/
description: "The Human Organ Atlas is making Hierarchical
Phase-Contrast Tomography (HiP-CT) 3D scans of entire organs,
with ca. 20 micron voxels, open access."
- short-name: TomoBank
name: X-Ray Tomography Data Bank
link: https://tomobank.readthedocs.io/en/latest/index.html
description: "The X-ray Tomography Data Bank or TomoBank, provides
a repository of experimental and simulated data sets with the aim
to foster collaboration among computational scientists, beamline
scientists and experimentalists, to accelerate the development of
tomographic reconstruction and 3D visualization methods and to
speed up their implementation in the various synchrotron facility
data analysis software packages."
data-license: CC-BY-4.0 with exceptions
technique:
- IRI: http://purl.org/pan-science/PaNET/PaNET01129
name: tomography
access: free
- short-name: CSD
name: Cambridge Structural Database
link: https://www.ccdc.cam.ac.uk/solutions/software/csd/
pic: https://www.ccdc.cam.ac.uk/media/CSD.png
description: "The Cambridge Structural Database, or CSD, has been
curated since 1965 from the published literature, direct deposition,
and sources such as patents and PhD theses.<br>
The world’s largest database of small-molecule organic and
metal-organic crystal structure data, the CSD is managed by the
Cambridge Crystallographic Data Centre (CCDC)."
coretrustseal: yes
technique:
- IRI: http://purl.org/pan-science/PaNET/PaNET01082
name: crystallography
access: subscription-based